turningA

bedtools2

A powerful toolset for genome arithmetic.

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

ContaVect

Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data

data-science-live-book

An open source book to learn data science, data analysis and machine learning, suitable for all ages!

Duplex-Sequencing

gepard

Genome Pair Rapid Dotter

googleCharts

Google Charts bindings for the Shiny web framework for R

hdbscan

A high performance implementation of HDBSCAN clustering. http://hdbscan.readthedocs.io/en/latest/

OncoTree

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

pyDNA

Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation

RADAR-seq

rmarkdown

Dynamic Documents for R

superNOVA

Precise Differential Coexpression Model Analysis Across Multiple Conditions

turningA.github.io

personal pages