tsjzz's repositories
NGS-analysis
二代测序数据分析
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
circlize
Circular visualization in R
clash
A rule-based tunnel in Go.
COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
dask-tutorial
Dask tutorial
EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads
exomePeak2
Bias aware peak calling and quantification for MeRIP-Seq
genomepy
genes and genomes at your fingertips
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
Johnyazz
data analysis
MACS
MACS -- Model-based Analysis of ChIP-Seq
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nanopolish
Signal-level algorithms for MinION data
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
RADAR
The project for analyzing differential methylation of MeRIP-seq data
rerio
Research release basecalling models and configurations
Roddy
The Roddy workflow development and management system.
SchwartzLab_ToolBox
A set of programs, and scripts that make our life easier analyzing biological data. Python, R and more progLangs
scRNA.seq.course
Analysis of single cell RNA-seq data course
seurat
R toolkit for single cell genomics
STAR
RNA-seq aligner
Training-modules
Materials for short, half-day workshops