Tyler R. Sizemore's repositories
2p_acq_code
Code for 2P acquisition computer (DANA/Wombat)
APT
Animal Part Tracker
Arduino
This is ArduCAM library for Arduino boards
awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
ColorMIP_Mask_Search
ColorMIP_Mask_Search plugin for Fiji
EXTRACT-public
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
fly2p
small package with utility functions for analyzing (fly) calcium imaging data
FlyCaImAn
Calcium Imaging Processing Pipeline of 3D time series
flydra
live, low-latency markerless multi-camera 3D animal tracking system
FlyLFM
This repository contains code used for the fly brain activity experiments
goodwin-lab-tracking
Pipline for processing and tracking courtship videos
hemibrainr
Code for working with data from Janelia FlyEM's hemibrain project
JAABA
Janelia Animal Behavior Detector
margo
High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.
MATLAB_DAQmx_examples
DAQmx Examples using MATLAB
MultiCamSelfCal
multiple camera self calibration Toolbox
NeuroMatic
NeuroMatic
panels-matlab
Matlab code to interface with the Reiser Panels system
R.matlab
R package: R.matlab
roipoly.py
Select a polygonal region of interest (ROI) with python and matplotlib, similar to the roipoly.m function from MATLAB.
scanimage-functions
User functions for customizing ScanImage
Sizemoreetal2023
This repository contains code used to analyze and plot the data in Sizemore et al., 2023 (https://doi.org/10.1038/s41467-023-41012-3).
training
Repository for training notebooks
treestoolbox
TREES toolbox
triggerbox
camera triggering for synchronized multi-camera setups
Zolin_etal_2021
Repository for data related to Zolin et al.