trvinh / fCatVis

UI for visualising fCAT results

fCatVis

UI for visualising fCAT results and comparing the completeness assessment between different data sets

Installation and usage

From an R terminal, PhyloRBF can be installed using devtools:

if (!requireNamespace("devtools"))
    install.packages("devtools")
devtools::install_github("trvinh/fCatVis", INSTALL_opts = c('--no-lock'), dependencies = TRUE)

Then, to run it, enter:

library(fCatVis)
runFcatVis()

Input

There are 2 kinds of inputs can be uploaded into fCatVis:

• A single summary report from fCAT
• A folder containing several summary reports. Each file has to be named using this format <species_name>.report_summary.txt (e.g.: HUMAN.report_summary.txt; CIONA.report_summary.txt; ...)

Screenshot

Contact

For any bug reports or questions, please open an issue on GitHub or be in touch via email [e-mail]