trutane

jupyterlab

JupyterLab computational environment.

covid-19-bh20

COVID-19 Biohackathon April 5-11 2020

covid-19-data

A repository of data on coronavirus cases and deaths in the U.S.

vim_cubed

Vim rendered on a cube for no reason

seaborn

Statistical data visualization in Python

zeppelin

Awesome conference website in 5 minutes.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

bioperl6

reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)

vscode-mssql

Visual Studio Code SQL Server extension.

bioSyntax

Syntax highlighting for computational biology

azuredatastudio

Azure Data Studio is a data management and development tool with connectivity to popular cloud and on-premises databases. Azure Data Studio supports Windows, macOS, and Linux, with immediate capability to connect to Azure SQL and SQL Server. Browse the extension library for more database support options including MySQL, PostgreSQL, and MongoDB.

sequenceTubeMap

displays multiple genomic sequences in the form of a tube map

PyVCF

A Variant Call Format reader for Python.

SnpEff

ydata-profiling

1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.

vscode-icons

Icons for Visual Studio Code

black

The uncompromising Python code formatter

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

vrs

Extensible specification for representing and uniquely identifying biological sequence variation

ds-cheatsheets

List of Data Science Cheatsheets to rule the world

hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

oneliners

Useful bash one-liners for bioinformatics.

pyyaml

Canonical source repository for PyYAML

vue

This is the repo for Vue 2. For Vue 3, go to https://github.com/vuejs/core

Pandas-Bokeh

Bokeh Plotting Backend for Pandas and GeoPandas

pizzly

Fast fusion detection using kallisto

schemaorg

Schema.org - schemas and supporting software

vscode-emacs-friendly

Visual Studio Code plugin emulating Emacs functionality