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reportseff

Tabular seff

snakemake-training

Increasingly complete example bioinformatics workflow

intermediate-vim

Workshop on getting better at vim

gtex-gatk4

Snakemake implementation of GATK4 pipeline for GTEx Project

ale

Check syntax in Vim asynchronously and fix files, with Language Server Protocol (LSP) support

BACIQ

MCMC estimates for proteomics analyses

msprime_scripts

archaic_match

bed-stats

Determine BP-level and region level statistics between two bed files

bed_vcf_match

Correlate bed calls with vcf information

bioconda-recipes

Conda recipes for the bioconda channel.

blocklint

cellpose

a generalist algorithm for cellular segmentation

Code-Review

CookieBot

Automatic Playthrough for Cookie Clicker

dotfiles

EcoSLIM

EcoSLIM

freezing-archer

Tools for identifying introgressed archaic sequence.

gene-proximity

Read GTF files and assign features based on proximity

IBDmix

msprime-model-errors

A short manuscript describing some modelling errors made with msprime

pre-commit.com

scikit-hep.github.io

Pages defining the website of the Scikit-HEP project.

se-for-sci

Course notes for APC 524 @ Princeton

slurm-scrub

Construct database from slurm performance

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

software-licensing

sstar2

C++ implementation of sstar analysis

starrpeaker

STARR-seq peak caller

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