tresoldi / ngesh

A Python library for generating random phylogenetic trees and related data

tresoldi/ngesh Issues

Allow different distributions for bad sampling simulation
Updated 3 years ago2
Allow different distributions for HGT simulation
Closed 3 years ago1
Simulate a "donation power" for taxa
Updated 3 years ago1
Implement distribution of character specific mutation rate
Updated 3 years ago1
Allow to exclude non extant taxa from horizontal gene transfer events
Closed 3 years ago1
Look for default parameters that are more closely related to linguistic trees
Closed 3 years ago1
Add stopping criterion on the global number of nodes
Closed 4 years ago2
Allow simulation of data problems
Closed 4 years ago1
Replace standard library random calls with numpy equivalents
Closed 4 years ago1
Allow hard politomies from the command line
Closed 4 years ago1
Rewrite functions with too many arguments to accept dictionaries of parameters
Closed 4 years ago1
Write iterator given distance from root
Closed 4 years ago1
Drop the abzu library
Closed 4 years ago1
Allow generation of unlabelled trees from the command-line
Closed 4 years ago1
Allow naming internal nodes
Closed 4 years ago1