Daniel Fürth's repositories
wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
spatial_transcriptomics_heart
high level analysis of spatial transcriptomics 3D data
brain-blocks
3D .STL models for brain blocks ready for 3D printing
wholebrain-examples
example R project files for WholeBrain
cfosAnalysisPipeline
how to use wholebrain to analysis cfos data
MMCore_OpenCV_Imgui
A minimal reproducible example showing how to get MMCore image buffer into OpenCV and display the result through Imgui
acm
Quarto template for the Association of Computing Machinery
Anubis
Proposal submission and review handling system.
cpd
C++ implementation of the Coherent Point Drift point set registration algorithm.
cpp-project
Boiler plate template for C++ projects, with CMake, Doctest, Travis CI, Appveyor, Github Actions and coverage reports.
fisseq
a R package for handling image processing related to FISSEQ data
manuscript
a manuscript template
marinerscap
python tool to design probes for various organisms
mmCoreAndDevices
Micro-Manager's device control layer, written in C++
PixelAnnotationTool
Annotate quickly images.
PointFlow
PointFlow : 3D Point Cloud Generation with Continuous Normalizing Flows
pugz
Truly parallel gzip decompression
pytorch-cpp
Pytorch C++ Library
SMART
Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
web_api_with_cpp
Front-end With React, Back-end With C++.