Taavi Päll's repositories
Getting_Started_with_AI_workshop
Jupyter notebooks, jobscripts and other files for the "Getting started with AI on LUMI" workshop
singularity-rstudio
RStudio Server in a Singularity container
geo-htseq-paper
Code used to generate summaries, models and figures for article "A field-wide assessment of differential high throughput sequencing reveals widespread bias".
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
aspera-singularity
singularity container with Aspera Connect client
classes-2019
Collection of materials that we use in R data analysis classes
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
docker-rstan
rstan packages on top of rocker/verse
dynamic
Creating dynamic documents with quarto
impute-me
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
incredible
hugo webpage
repeatmasker-singularity
RepeatMasker singularity image recipe
rstudio
Docker image for analyses using RStudio and Python-Conda
singularity-r
R in a Singularity container
singularity-tidyverse
Singularity image running R tidyverse + some other libraries
testing_module
testing_exercise