Kisuk Lee's repositories
Superhuman
Superhuman Accuracy on the SNEMI3D Connectomics Challenge
mutex-watershed
The mutex watershed for image segmentation.
Augmentor
Data augmentation for training 3D convolutional nets
DataProvider3
DataProvider for Python3
DataTools
A C++ extension to DataProvider
DeepEM
Deep Learning for EM Connectomics
domain-adaptive-segmentation
Domain adaptation segmentation for volume EM imaging
EM-data
EM data manipulation
evaluator
Evaluation
ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
GASP
Generalized algorithm for agglomerative clustering of signed graphs
gunpowder
A library to facilitate machine learning on multi-dimensional images.
nifty
A nifty library for graph based image segmentation.
pytorch-emvision
PyTorch models.
samplemod
Sample module for Python-Guide.org.
segascorus
Error Metrics for Volumetric Segmentation
SegLoss
A collection of loss functions for medical image segmentation
supervised-gan
Code for Supervised GANs
Synaptor
Processing voxelwise descriptors for Connectomics
tensorstore
Library for reading and writing large multi-dimensional arrays.
UroCell
Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria and endolysosomes.
waterz
Simple watershed and agglomeration library for affinity graphs.