unknown-proportions

There are 0 repository under unknown-proportions topic.

• DEploid-dev / DEploid

  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

  mcmcdeconvoluting-mixed-genomesunknown-proportionsmalariaparasitesphasinghmm-model
  Language:C++ 20

• DEploid-dev / DEploid-r

  An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

  mcmcdeconvoluting-mixed-genomescranunknown-proportionshmmmalariaparasitesphasing
  Language:C++ 1