core-package
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Bioconductor / BiocParallel
Bioconductor facilities for parallel evaluation
Language:R 65Efficient manipulation of biological strings
Language:R 53[DEPRECATED] An R package for Google Genomics API queries.
Language:R 44Representation and manipulation of genomic intervals
Language:R 43Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Language:R 30- Language:R 29
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Language:R 26Conveniently import and query gene models
Language:R 25A unified framework for working transparently with on-disk and in-memory array-like datasets
Language:R 24- Language:R 23
Foundation of integer range manipulation in Bioconductor
Language:R 21Foundation of vector-like and list-like containers in Bioconductor
Language:R 17- Language:R 16
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Issues and pull requests for BiocStyle should go here.
Language:R 12S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Language:R 12Defines many S4 generic functions used in Bioconductor
Language:R 11- Language:R 11
HTSlib high-throughput sequencing library as an R package
Language:C 11- Language:R 9
Manipulation of SQLite-based annotations in Bioconductor
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Software infrastructure for efficient representation of full genomes and their SNPs
Language:R 8Representation and manipulation of short genomic alignments
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High-performance sparse data representation and manipulation in R
Language:C 8- Language:R 7
mojaloop / sdk-standard-components
A set of components that encode standard practices for interacting with Mojaloop API compliant systems
Language:JavaScript 6genefilter: methods for filtering genes from high-throughput experiments
Language:R 5Gene set enrichment data structures and methods
Language:R 5Foundation of array-like containers in Bioconductor
Language:R 5- Language:R 4
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[DEPRECATED] R Interface to Ensembl Variant Effect Predictor
Language:R 4- Language:TeX 4
graph: A package to handle graph data structures
Language:R 4