Tony Reina's repositories
antibody-affinity
Antibody affinity modeling
python_for_poets
Introduction to Python tutorials
tdc-tcr-epitope-antibody-binding
Example notebook for creating a deep learning model to predict if a T-cell receptor (TCR) and protein epitope will bind to each other
retrosynthesis
Chemistry retrosynthesis modeling
unet-broad-nuclei
A 2D U-Net to segment nuclei from images of cells. The dataset is from the Broad Bioimaging Benchmark Collection (https://bbbc.broadinstitute.org/BBBC038).
AAV-Triple-Transfection-Mechanistic-Model
Mechanistic model for AAV viral vector production via triple transfection. Published June 15th 2021
bioconda-recipes
Conda recipes for the bioconda channel.
cld_docker
Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2
convolution
Convolutional figures
CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dash-sample-apps
Open-source demos hosted on Dash Gallery
jupyter-dash
Develop Dash apps in the Jupyter Notebook and JupyterLab
keras_tutorials
Keras Tutorials
POT_tutorial
OpenVINO Post-Training Optimization Toolkit Tutorial
scikit-image
Image processing in Python
TRILL
Sandbox for Deep-Learning based Computational Protein Design
zincbindpredict
Zinc Bind Prediction based on https://github.com/samirelanduk/ZincBindPredict
ZincBindPredict-1
Predictive models of zinc binding