tonyreina

chemistry

Using TensorFlow to model chemistry problems

antibody-affinity

Antibody affinity modeling

python_for_poets

Introduction to Python tutorials

tdc-tcr-epitope-antibody-binding

Example notebook for creating a deep learning model to predict if a T-cell receptor (TCR) and protein epitope will bind to each other

retrosynthesis

Chemistry retrosynthesis modeling

unet-broad-nuclei

A 2D U-Net to segment nuclei from images of cells. The dataset is from the Broad Bioimaging Benchmark Collection (https://bbbc.broadinstitute.org/BBBC038).

zincbind2

Zinc bind

AAV-Triple-Transfection-Mechanistic-Model

Mechanistic model for AAV viral vector production via triple transfection. Published June 15th 2021

bci_eeg

bioconda-recipes

Conda recipes for the bioconda channel.

cld_docker

Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2

convolution

Convolutional figures

CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

dash-sample-apps

Open-source demos hosted on Dash Gallery

Docker

histology

Histology TensorFlow Demo

jupyter-dash

Develop Dash apps in the Jupyter Notebook and JupyterLab

keras_tutorials

Keras Tutorials

mol2vec

Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures

OpenFederatedLearning

openfl

An open framework for Federated Learning.

openvino

OpenVINO™ Toolkit repository

POT_tutorial

OpenVINO Post-Training Optimization Toolkit Tutorial

scikit-image

Image processing in Python

training

Reference implementations of training benchmarks

TRILL

Sandbox for Deep-Learning based Computational Protein Design

upenn

Code for running TensorFlow on UPenn submission system.

zincbindpredict

Zinc Bind Prediction based on https://github.com/samirelanduk/ZincBindPredict

ZincBindPredict-1

Predictive models of zinc binding

zincfingers