tomopfuku

mandos

calculating likelihoods of stratigraphic and morphologic data on phylogenies

cophycollapse

Parametric unsupervised learning of mosaic evolutionary patterns from quantitative traits

cophymaru

Parametric phylogenetic inference using continuous traits and stratigraphic ranges

hominin_anagenesis

scripts, results, and data from a paper

mosaic

scripts, simulated data, etc, from a paper

phylojulia

Phylogenetics and bioinformatics in the Julia language

tomopfuku.github.io

bayonet

bayesian inference of phylogenetic networks

eeb1453h_w2022

fossil_placement_tests

scripts, files, etc, from a paper

GSA2018

Continuous-Trait-Simulations

continuous_trait_reconstruction

reconstructing phylogeny using continuous traits

cophyashi

Explorations in the comparative analysis and phylogenetic reconstruction of fossil taxa

eeb463_assignments

evolution2017

gophy

lagrange-python

extension of DEC model

mammalian_morphological_clocks

scripts for data processing, analysis, and simulation used in a study investigating signal in Bayesian morphological clock analyses

pf-lab-phylogenetics

starter phylo code for folks