tommysprague

psychopy

For running psychology and neuroscience experiments

mlb-led-scoreboard

An LED scoreboard for Major League Baseball :baseball:

pycortex

Pycortex is a python-based toolkit for surface visualization of fMRI data

heudiconv

Flexible DICOM conversion into structured directory layouts

afni

Official AFNI source and documentation

vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.

FDBeye

R tools for eyetracker workflows.

BROCCOLI

BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs

plenoptic

Visualize/test models for visual representation by synthesizing images.

NORDIC_Raw

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

ADAM

the Amsterdam Decoding And Modeling (ADAM) toolbox

Tools

all kinds of random code tools

pcm_toolbox

Pattern Component Modelling toolbox for multivariate analysis

bidsify

Tool to convert raw MRI datasets to BIDS-compatible datasets

ToolboxToolbox

Declarative dependency management for Matlab.

edfImport

This library provides a simple interface to import contents of the EDF files generated by Eyelink eye-tracker into Matlab. It imports events and/or samples, automatically parsing them into separate trials. In addition to that, several post-processing functions can be used to extract selected events (fixations, saccades and blinks), variable values (TRIAL_VAR events) and microsaccades.

iEye

MATLAB eye-movement data toolbox

mgl

A suite of mex/m files for displaying psychophysics stimuli

surfing

a Matlab / Octave toolbox for surface-based voxel neighborhood selection on the cerebral cortex, intended for informationg mapping of functional magnetic resonance imaging (fMRI) data

spynoza

python package for fMRI data processing

decode_encode

tutorials

Preprocess_EEG_EyeTrack

Pipeline for preprocessing EEG and eye tracking data for use with BainProducts ActiCHamp and EyeLink 1000 Plus.

inverted_encoding

noisecorrelation

Code for noise correlation paper

LGN-figureground

Data and code accompanying Poltoratski, Maier, Newton, and Tong. (2019) Figure-ground modulation in the human lateral geniculate nucleus is distinguishable from top-down attention. Current Biology.

freesurfer_BV_tools

Tools to convert between BrainVoyager anatomical files and Freesurfer anatomicals (with segmentations)