tomboulier / HelloWorld-ML-MedicalImaging

An example of how to manage projects in machine learning with medical imaging.

Hello World for Machine Learning in Medical Imaging

The idea is based on this article, the code and data come from this repo.

I want to start from this state of code and makes it "more MLOps", i.e.

• version control (Git and DVC),
• main code put outside notebook, to a proper Python package,
• testing (Pytest) and CI/CD (e.g. GitHub Actions),
• logging,
• configuration file for global variables (e.g. with dynaconf),
• Object-Oriented Programming with best practices, such as Design Patterns.

Installation and usage

Install required dependencies:

pip install -r requirements.txt

Run the tests:

pytest tests.py

Run the main script:

python main_script.py