Tomáš Pluskal's repositories
old-mzmine3
MZmine 3 source repository (unstable, for developers only)
badass-runtime-plugin
Create a custom runtime image of your non-modular application
cdk
The Chemistry Development Kit
cdk-paper-3
Repository with the Latex source code for the CDK III paper.
cdk.github.io
CDK Landing Page
gradle
Adaptable, fast automation for all
jfreechart
A 2D chart library for Java applications (JavaFX, Swing or server-side).
jmzml
Automatically exported from code.google.com/p/jmzml
masspp
Mass++ clone
ms-numpress
Implementations of compression schemes for numeric data from mass spectrometers.
msdk
MSDK source code repository
mzmine3
MZmine 3 source code repository
mzmine_documentation
mzmine_documentation
nextflow
A DSL for data-driven computational pipelines
OpenMS
The codebase of the OpenMS project
sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
sirius_frontend
This is the SIRIUS frontend, containing the GUI and the CLI for the SIRIUS library and CSI:FingerID integration
spectra-hash
The splash, this is the reference documentation
TPSdownloader
Fetch TPS cyclases information from various sources
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
xxindex
A library to index XML files for random access.