Tom Atkinson's repositories
AminoSee
AminoSeeNoEvil (or just AminoSee) is a DNA visualisation that assigns a unique colour hue to each amino acid and start/stop codon in the sequence, and then projects it into 2D and 3D space using an infinite mathematics space-filling function called the "Hilbert curve". This is done to preserve sequence proximity such that 90% of the DNA that is close to its neighbour - such as genes - are also closeby in the image at different resolutions. Genomics researchers can convert any file containing ASCII blocks of DNA (tested with popular formats Fasta, GBK, and also just .txt) into an image. A unique visualisation of DNA / RNA residing in text files, AminoSee is a way to render arbitrarily large files - due to support for streamed processing - into a static size PNG image. Special thanks and shot-outs to David Hilbert who invented it in 1891! Computation is done locally, and the files do not leave your machine. A back-end terminal daemon cli command that can be scripted is combined with a front-end GUI in Electron, AminoSee features asynchronous streaming processing enabling arbitrary size files to be processed. It has been tested with files in excess of 4 GB and does not need the whole file in memory at any time. Due to issues with the 'aminosee *' command, a batch script is provided for bulk rendering in the dna/ folder. Alertively use the GUI to Drag and drop files to render a unique colour view of RNA or DNA stored in text files, output to PNG graphics file, then launches an WebGL browser that projects the image onto a 3D Hilbert curve for immersive viewing, using THREEjs. Command line options allow one to filter by peptide.
awaken-direct-democracy
Concept stage storyboards for a mobile web-app to enable NZ citizens cast private and secure digital votes into a public block-chain backed parliament. Vote in elections, acts and bills – on legislation past current and future! Currently seeking NodeJS developers. Currently we are merging two codebases: the "awaken wireframes" shown in an iframe below root url is: https://www.awaken.guru/wp-content/uploads/awaken-wireframes/index.html#/ the "awaken github/npm/ionic" package at: https://github.com/tomachinz/awaken-direct-democracy https://www.npmjs.com/package/awaken-direct-democracy This is a working HTML demo that uses a Cordova-based Javascript platform called Ionic Creator wireframe demo app ID 1e395f0d8e2f. PS Although this looks like a fork of Urigo's repo, it's not I did select all delete and went forward. It's my first open source project :)
currentrmszap
Current-RMS Zap connects this rental management CRM to Zapier code-free automation app
Advance-Android-Tutorials
Advance Android Tutorials
Amphitheatre
Amphitheatre is an Android TV app that connects with network shares, organizes and serves videos to any Android capable media player app.
android-dropbear-sshd
Automatically exported from code.google.com/p/android-dropbear-sshd
Fast-Reboot-Mac
Shell script that creates background root reboot that kicks in if the regular restart using Finder is taking too long, by also issuing a Finder restart.
killall-nonaudio
A shell script that's sole design is to shutdown / killall processes that aren't related to music. Audio recording and live performance in Logic and other music apps. No audio drivers would be shutdown.
ember-crud
Simple CRUD for Ember.js 1.1.2 with Ember Data 1.0.0beta3 + Touch gestures mobile (responsive) version + Grunt templates precompiling
HTML5_Genetic_Cars
A genetic algorithm car evolver in HTML5 canvas.
lbry.com
lbry.com, the website for the LBRY protocol
openmediavault-docs
openmediavault documentation
preferences
Node.JS module for managing CLI application encrypted preferences
rms-support-letter.github.io
An open letter in support of Richard Matthew Stallman being reinstated by the Free Software Foundation
trufflesuite.com
Truffle Suite website source