toddknutson

genbank_scrapper

GenBank Metadata Extraction Tool

2019Talks

2019 Speaker Materials

2020Talks

Speaker materials for 2020 conference

asciidoc-samples

A repository of AsciiDoc source files for testing AsciiDoc rendering on GitHub.

bbedit_codeless_language_module_R

BBEdit coddles language module for R

Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

cephtools

Safely copy data from high performance storage (panfs) to object based storage (ceph)

mdlvalr

Molecular Diagnostics Lab (MDL) clinical validation R package

modules_install_notes

Bash scripts for reproducible software installation as modules

software_tips

A collection of various software tips and tricks.

toddr

R package for RNAseq, scRNAseq, variant calling, and other bioinformatics methods used by Todd

data_sharing_tips

The Leek group guide to data sharing

education_global_warming

Coursera: Data Analysis & Statistical Inference. Project using survey data.

most_costly_storms

Coursera: Reproducible Research. Identify the most costly storms in USA.

personal_activity_monitoring

Coursera: Reproducible Research. Discover patterns in daily activity.

plotting_in_R

Coursera: Exploratory Data Analysis. Basic plotting in R.

pollution_in_USA

Coursera: Exploratory Data Analysis. Explore fine particulate matter pollution in US cities.

predict_weightlifting_form

Coursera: Practical Machine Learning. Train learning algorithm to predict weightlifting form.

r-source

Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.

testing

tests-as-linear

Common statistical tests are linear models (or: how to teach stats)

toddknutson