Tobias "Tobi" Schraink's repositories
Awesome_Malaria_Parasite_Imaging_Datasets
This repository is an attempt to list all malaria parasite imaging datasets (blood smears). Contributions welcome!
BADAS_Nextflow_Tutorial
Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology
3-nextflow-patterns
This repo contains code snippets and markdown illustrating 5 useful Nextflow patterns.
Bokeh_genome_explorer
This is my first Bokeh server app. I built it to help me visualize some underlying properties of bacterial genomes.
deus-excel-machina
When you are sent a spreadsheet that has been filled in without automated processing in mind, processing and cleaning can become daunting. This is a quick tutorial with an example spreadsheet teaching you some common techniques.
singularity_containers
SingularityHub container definition for a containers that I need for my workflows that aren't already available on biocontainers etc.
bioconda-recipes-phosphodisco
Conda recipes for the bioconda channel.
dask-tutorial
Dask tutorial
dask_tutorial2
Short Dask Tutorial for my local Coding Club
FilterBlade-Public-Assets
Contains public custom files, such as extra hover descriptions for items listed on FilterBlade.
Folium_Tutorial
A short folium tutorial that I created based on Rob Story's talk "Up and Down the Python Data and Web Visualization". I use public data from NYC's opendata portal as well as publicly maintained geoJSON files.
Golub_dataset_Class_Prediction_Python
This repository contains a Jupyter Notebook with a couple classifiers trained on the famous Golub_dataset
GRO_aggregator
Biotech event aggregator web page source code; #django
GRO_Your_Career_2019_RSVP_Analysis
In this repo, I am analyzing the RSVP data gathered for the GRO Your Career Conference 2019: http://groyourcareer2019.splashthat.com
nextflow_patterns
This is a collection of nextflow snippets I have created for myself for when I couldn't find something on http://nextflow-io.github.io/patterns/ or needed to clarify a pattern for myself.
nyubiotechsite
website for the NYU Biotech Association
vim_settings
A repo for my .vimrc, filetype.vim, syntax, etc.