tobiasrausch

followers

following

stars

EMBL

Germany

https://tobiasrausch.com

Organizations

1kg-ont-vienna

bioconda

dellytools

gear-genomics

ghga-de

Tobias Rausch's repositories

alfred

BAM Statistics, Feature Counting and Annotation

Language:C++BSD-3-Clause144 10 45

wally

Wally: Visualization of aligned sequencing reads and contigs

Language:C++BSD-3-Clause107 3 10

ATACseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

Language:ShellBSD-3-Clause74 7 6

vc

A tutorial on structural variant calling for short read sequencing data

Language:RBSD-3-Clause26 3 2

lorax

A long-read analysis toolbox for cancer and population genomics

Language:C++BSD-3-Clause20 30

nRex

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

Language:ShellMIT12 30

rayas

Templated insertion discovery

Language:C++BSD-3-Clause8 30

tenX

Tools for 10X

Language:C++GPL-3.08 3 1

covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

Language:PythonBSD-3-Clause6 3 3

rdxon

Reference-free FASTQ filter for rare germline and somatic variants

Language:C++BSD-3-Clause5 30

repliseq

Repli-Seq analysis pipeline

Language:C++GPL-3.05 30

kmerdbg

Scripts to build and analyze compacted de Bruijn graphs

Language:RBSD-3-Clause400

RNAseq

RNA-Seq processing pipeline

Language:ShellGPL-3.03 30

allis

Allele-specific expression

Language:C++GPL-3.02 30

circosplots

Scripts to generate circos plots

Language:PythonGPL-3.02 30

coral

Coral: COpy-numbeR ALterations

Language:C++GPL-3.02 40

lamp

LAMP testing (Covid screening)

Language:RBSD-3-Clause2 30

ml2

Machine Learning

Language:C++BSD-3-Clause2 30

sv

Structural variant calling tutorial using long-reads.

Language:RBSD-3-Clause2 10

vcfaid

VCFaid: Genotype likelihood based GQ estimation

Language:C++GPL-3.02 30

workflows

Workflows

Language:Common Workflow LanguageBSD-3-Clause2 30

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Language:CNOASSERTION1 10

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT1 30

dbg

dbg stuff

Language:Dockerfile1 30

exercise1

exercise 1

MIT1 30

indexingtests

Indexing Tests

Language:C++GPL-3.01 30

phaseBam

Phase a BAM file using a phased SNP scaffold

Language:C++GPL-3.01 30

pods

Kubernetes (K8s) stuff

Language:ShellBSD-3-Clause1 30

t-all

Scripts

Language:RBSD-3-Clause1 30

tobiasrausch.github.io

Homepage of Tobias Rausch

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