GHGA - The German Human Genome-Phenome Archive

ghga-metadata-schema

Metadata schema for the German Human Genome-Phenome Archive (GHGA)

hexkit

A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.

auth-service

Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol

docs.ghga.de

GHGA User Documentation

ghga-datasteward-kit

GHGA-internal scripts to be used by data stewards.

homogeneous-data-processing

metldata

A framework for handling metadata based on ETL, CQRS, and event sourcing.

nf-snvcalling

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

data-portal-ui

epic-docs

Documentation and plans for service development milestones

gh-action-common

ghga-connector

CLI - Client to perform up- and download operations to and from a local ghga instance

ghga-event-schemas

A package that collects schemas used for messaging between GHGA service.

mass

A service for searching metadata artifacts and filtering results.

microservice-repository-template

A template for Python-based microservice repositories with continuous update delivery.

access-request-service

beacon2-ri-api

This is the v2 Beacon Reference Implementation deployed at GHGA. For the base implementation please see https://github.com/EGA-archive/beacon2-ri-api/

charts

dataset-information-service

example-data

GHGA Example Data

file-services-backend

gh-action-ci

Common steps executed within CI pipelines of GHGA.

gh-action-pypi

ghga-transpiler

notification-orchestration-service

notification-service

state-management-service

test-oidc-provider

well-known-value-service

work-package-service

Service that handles work packages for the CLI client