GHGA - The German Human Genome-Phenome Archive

ghga-metadata-schema

Metadata schema for the German Human Genome-Phenome Archive (GHGA)

hexkit

A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.

auth-service

Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol

homogeneous-data-processing

metldata

A framework for handling metadata based on ETL, CQRS, and event sourcing.

nf-aceseq

a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow

nf-platypusindelcalling

This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ

nf-snvcalling

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

schemapack

Make your JSON Schemas sociable and create linked data model.

data-portal-ui

download-controller-service

A GA4GH DRS-compliant service for delivering GA4GH Crypt4GH-encrypted objects from S3.

encryption-key-store-service

file-ingest-service

gh-action-common

ghga-connector

CLI - Client to perform up- and download operations to and from a local ghga instance

ghga-datasteward-kit

GHGA-internal scripts to be used by data stewards.

microservice-repository-template

A template for Python-based microservice repositories with continuous update delivery.

access-request-service

archive-test-bed

charts

epic-docs

Documentation and plans for service development milestones

file-services-backend

gh-action-pypi

ghga-event-schemas

A package that collects schemas used for messaging between GHGA service.

ghga-service-commons

ghga-transpiler

ghga-validator

notification-orchestration-service

purge-controller-service

work-package-service

Service that handles work packages for the CLI client