tobbyxy

multiPrime

multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))

catch

A package for designing compact and comprehensive capture probe sets.

DEGEPRIME

A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

swga

Select primer sets for selective whole genome amplification (SWGA)

primalscheme

a tool for designing primer panels for multiplex PCR.

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

Nanog

Full data analysis of Nanog project.

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Data-Science-Projects-For-Resumes

Data-science

Collection of useful data science topics along with articles, videos, and code

LINGER

fusion

The simplest way to do brain and behaviour research - right in your browser or mobile phone. Discord: https://discord.gg/sqsuzXWE3K

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

GSoC

Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

labs

Rmd source files for the HarvardX series PH525x

Basset

Convolutional neural network analysis for predicting DNA sequence activity.

DL-genomics-exercise

Jupyter notebooks for the system genetics lecture exercise 11 thought at TUM

deeplift

Public facing deeplift repo

dragonn

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

neural_motif_discovery

Framework for interrogating transcription-factor motifs and their syntax/grammars from neural-network interpretations

2020_scWorkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

Wordle-Bot

An entropy-based strategy to wordle

clmystery

A command-line murder mystery

Data-Science-books-

A repository of books in data science

Stock-Prediction-Neural-Network-and-Machine-Learning-Examples

Examples of python neural net and ML stock prediction methods with sample stock data.

CRFE

intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

100_page_python_intro

:snake: Short, introductory guide for the Python programming language :green_book: :zap:

motif-clustering

Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

scnmt_gastrulation

scNMT-seq gastrulation