tmsincomb

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Troy Sincomb's repositories

ImageToCSV

Converts an image to a CSV. This exists because Chorus 3.0 is bat-shit and only show images for vital metadata.

Language:PythonMIT4 1 1

SeqPandas

Import genomic data to get a Pandas & Biopython hybrid with fancy shortcuts to make Machine Learning preprocessing easy!

Language:Jupyter NotebookMIT3 2 6

Gracie

Geek Stuff

Language:Jupyter Notebook1 20

amigo

Amigo 2 API Wrapper

Language:PythonMIT020

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

Language:PythonBSD-3-Clause010

ANT

Ambiguous Nucleotide Tool (ANT), software for generating and evaluating degenerate codons for natural and expanded genetic codes.

Language:PythonGPL-3.0010

codonlib

Codon Degeneracy

Language:Jupyter NotebookMIT02 6

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yours!

Language:MakefileMIT010

bikotbi.io

This site contains code, tools and resources for the construction and maintenance of the Brain Injury Knowledge Ontology (BIKO) for traumatic brain injury (TBI).

Language:SCSS000

bioportal-api

API Wrapper for BioPortal's rest API

MIT020

biopython

Official git repository for Biopython (originally converted from CVS)

Language:PythonNOASSERTION010

coffee-src

USDA's coffee import and export website skeleton.

Language:Jupyter NotebookMIT000

DeepVCF

Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

Language:Jupyter NotebookMIT030

fastMRI-1

A large-scale dataset of both raw MRI measurements and clinical MRI images

Language:PythonMIT010

GenScript

FARM stack (FastAPI, Retool, MongoDB) for the Protein Production Pipeline by connecting P4 to P3

Language:Jupyter NotebookMIT020

globus-timer-cli

CLI for interacting with the Timer API

Language:PythonApache-2.0000

gs-tools

Google Sheet general tools using gspread

Language:PythonMIT020

h5ad-tutorial

Some h5ad single cell file parsing work to help with future projects

Language:Jupyter Notebook020

NIF-Ontology

NIF Standard Ontologies (NIFSTD)

CC-BY-4.0010

ontology-visualization

A simple ontology and RDF visualization tool.

MIT000

ontquery

a framework querying ontology terms

Language:PythonMIT010

pandastitch

Overlap assembler of paired-end DNA sequences generated by Illumina

Language:PythonMIT010

pyhmmer

Cython bindings and Python interface to HMMER3.

Language:CythonMIT010

pymuscle5

Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

Language:CythonGPL-3.0000

pyontutils

python utilities for working with ontologies

Language:PythonMIT020

pywgsim

Python wrapper around the wgsim short read simulator.

Language:CMIT010

RFdiffusion

Code for running RFdiffusion

Language:PythonNOASSERTION000

salmon-rnaseq

scRNA-seq pipeline using Salmon for quantification

Language:HTMLGPL-3.0000

seaborn-fork

Statistical data visualization in Python

Language:PythonBSD-3-Clause000

Simulome

Simulome, genome and mutant variant simulator.

Language:PythonMIT010