tlemane

Téo Lemane's repositories

kmtricks

modular k-mer count matrix and Bloom filter construction for large read collections

Language:C++AGPL-3.068 5 30

kmindex

Index kmtricks bf matrices

Language:C++AGPL-3.03800

kmdiff

Differential k-mer analysis

Language:C++AGPL-3.030 3 6

cpp-app-template

Language:CMakeAGPL-3.07 10

kmercpp

Language:C++AGPL-3.01 30

simka

Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets.

Language:C++AGPL-3.0100

alacritty-theme

Collection of Alacritty color schemes

Apache-2.0000

aoc

Advent of code

Language:C++010

bcli

Language:C++MIT010

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

cfrcat

Language:C++MIT010

biolib

Library containing useful building blocks for bioinformatics software

Language:C++MIT000

cutevariant

A standalone and free application to explore genetics variations from VCF file

GPL-3.0000

gatb-core-stripped

Language:C++AGPL-3.0010

HAWK

Hitting associations with k-mers

Language:C++GPL-3.0000

HowDeSBT

Sequence Bloom Tree, supporting determined/how split filters

Language:C++MIT000

jc2bim-tp-bwt

Language:Jupyter Notebook020

KaMRaT

Language:C++000

kff-cpp-api

A C++ API to read and write kff files

Language:C++AGPL-3.0000

kmdiff-experiments

Language:Shell010

metaprofi

MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant genetic variants

Language:PythonGPL-2.0000

mini-miner

Language:C++AGPL-3.0000

ori-helper

Language:C++010

REINDEER

REINDEER REad Index for abuNDancE quERy

Language:C++AGPL-3.0000

sdsl-lite

Succinct Data Structure Library 2.0

Language:C++NOASSERTION000

Simka-HowDeSBT

Language:C++000

tlemane.github.io

Language:HTML010

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Language:PerlBSD-3-Clause000

wgsim

Reads simulator

Language:C000

write-a-C-interpreter

Write a simple interpreter of C. Inspired by c4 and largely based on it.

Language:CGPL-2.0000