tjjjohnson

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

bcftools

This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib

Dropbox-Uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

metasearch

Search aggregator for Slack, Google Docs, GitHub, and more :mag:

nz-river-level-alerts

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities