tischi

cellprofiler-practical-NeuBIAS-Lisbon-2017

fiji-correct-3d-drift

fiji-plugin-multiModalDataViewer

segmentation-annotator

mcib3d-plugins

ImageJ plugins for 3D processing and analysis

nextflow-examples

transforms-utils

bigdataviewer-bioformats

Opens bioformat images in BigDataViewer

bigdataviewer-biop-tools

Another repo for bdv tools.

bigdataviewer-core

ImgLib2-based viewer for registered SPIM stacks and more

bigdataviewer-spimdata-extras

Extra settings that can be stored in spimdata file format

bigdataviewer_fiji

Fiji plugins for starting BigDataViewer and exporting data.

EasyXT-FIJI

Commands and Classes for interfacing between Imaris and Fiji

fiji-plugin-em-tomogram-matching

fiji-plugin-morphometry

fiji-plugin-template

fiji-plugin-yaml-metadata

hot-knife

i2k-2020-s3-zarr-workshop

ilastik4ij

ImageJ plugins to run ilastik workflows

imagej-net-static

Final version of MediaWiki imagej.net

imglib2-roi

Regions of interest (ROIs) and labelings for ImgLib2

list-of-update-sites

The update sites ImageJ knows about automatically

MorphoLibJ

Collection of mathematical morphology methods and plugins for ImageJ

n5

Not HDF5

n5-aws-s3

N5 library implementation using Amazon Web Services S3 backend.

n5-zarr

Zarr filesystem backend for N5

pom-scijava

Friendly base POM for all SciJava-based software

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

TrackMate

TrackMate is your buddy for your everyday tracking.