tin6150

psg

Pocket Survival Guide for Sys Admin - http://psg.skinforum.org/ -

bofhbot

tool to help troubleshoot hpc cluster (slurm for now). for lazy sys admins :)

circos

circos.ca in a singularity container

r4eta

Container for R with libraries for LBNL Energy Technology Area project

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

Alameda_CRE_2022

Code and Datasets for Alameda_CRE 2022

ATLAS_public_release

Public release of standalone ATLAS, including run instructions and sample inputs/outputs

beast2

Bayesian Evolutionary Analysis by Sampling Trees

biolearn

random bits of stuff that I am using to learn various bioinformatics tools

cloudseed4eta

Scripts and documentation to seed AWS cloud environment for ETA BILD-AQ project

Console-Player

Audio Player in Console Implemented Using C/C++

covid19_care_capacity_map

hospital bed capacity by state vs covid19 cases

epiinfo

random assortment of script for epidemiology informatics data analysis

gpu-test

containerization of https://gitlab.com/gustav.r.jansen/cuda-examples

inet-dev-class

codes and other files related to internet development

mousepad

Unofficial container build for xfce4 gui text editor Mousepad

ntcl

==> this is a fork / containerization of NTCL, upstream repo is https://gitlab.com/ntcl/ntcl <==

perf_tools

collection of performance tools in centos (iperf3, perf, htop, etc)

PHW251_Fall2022

phw272c.github.io

phylotool

containarization of the BEAST phylogenetic software

prj007

publication

repo for my publications

py-conda

unofficial python with conda -- intended as container in hpc environent

python

unofficial conversion of python from docker to singularity

rstudio

unofficial container of rstudio, intend use for Viz/GUI login node of HPC cluster,

satoolbag

sys admin tool bag - ie fat container with many sys admin programs in it

seq_db

sequence database, as custom db for abricate for amr vgf search use

software_module_farm

build a software tree on a NFS sever for shared host use, eg in HPC cluster

tftpd

simple container for tftp server