Timp Lab

Timp Lab's repositories

nanopore-methylation-utilities

Language:Python29 3 5

nanoNOMe

nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis

Language:Python15 6 1

Cas9Enrichment

scripts for analysis associated with Cas9Enrichment publication

Language:Shell11 4 1

T2T-Epigenetics

Repository for analysis scripts for the T2T Epigenetics manuscript

Language:HTML7 2 2

timp_nanoporesv

Code supplement for Norris et al. paper on structural variation detection with

Language:Python6 3 1

Telomere_Length

This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"

Language:R4 20

hummingbird

Language:ShellMIT3 3 1

bcmb_bootcamp

Repo for BCMB Computational Bootcamp Course

Language:Jupyter Notebook2 90

jhu-covid-pipeline

Viral Genomics Pipeline in use at JHU

Language:Shell200

ncov

ncov work

Language:Shell2 80

ambic-epigenome

AMBIC Epigenomics project analysis

Language:Jupyter NotebookMIT1 30

chm13_meth

Methylation analysis of chrx in chm13 assembly

Language:HTML1 40

Yeast-Telomere-Nanopore

Telomere length measurement

100

card-krakendb

Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database

Language:RGPL-2.0020

chicken

Language:R000

cpowgs_r21

Code/scripts involvign cpowgs R21 grant

Language:HTML020

drewes_fmt

Analysis scripts for JCI Insight paper

Language:Shell040

Drug_resistant_GBM

FLAIR and SUPPA2 analysis for "Targeting destabilized DNA g-quadruplexes and aberrant splicing in amyloid-like aggregate positive drug-resistant glioblastoma"

Language:Jupyter Notebook000