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tschaefers's repositories

Conda recipes for the bioconda channel.

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genes and genomes at your fingertips

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Example Nextflow pipelines and programming techniques

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The source code that powers readthedocs.org

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A proof of concept of RNAseq pipeline

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RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

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From fastq to preprocessed counttable (for in-house CELSeq2 method), with Kallisto | Bustools workflow.

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Language:Jupyter NotebookApache-2.0010