Jeff Cole's repositories
alntk
A toolkit for various summarizations of multiple sequence alignments
berthapin
Using BERT protein models to classify Beta hairpin peptides
bioconda-recipes
Conda recipes for the bioconda channel.
course-nlp
A Code-First Introduction to NLP course
dots
A series of experiments to draw / render shapes using dots with p5
duomolog
An approach to identify the best set of homologous sequences from two homology searching approaches
fusion-report
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
gene_art
A set of experiments to generate art visuals from genes
generativert
Scripts for making generative art using Javascript and the P5 library
killer_knots
Source code for molecular evolution of inhibitor cystine knot toxins in wandering spiders
metafrek
A tool to efficiently calculate 3mer or 4mer frequencies in large metagenomic datasets.
microbium-app
Draw new worlds
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
pinetree
🌲 a flexible gene expression simulator with codon-specific translation rates
practical_protein_science
A modern approach to the study of proteins
rnafusion
RNA-seq analysis pipeline for detection gene-fusions
smrnaseq
A small-RNA sequencing analysis pipeline
subpep
A method to generate peptide sequence subsets
summarizeAnnotatedGenome
A snakefile to summarize assemblies with a gff3 file, such as those found in Ensembl
tile-stitch
Stitch together and crop map tiles for a specified bounding box
venom_codon_usage
Analysis of venom codon usage in venom genes
wowchemy-hugo-modules
📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!