Tim-Oliver Buchholz's repositories
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
blur-pool-keras
Keras implementation of BlurPool layers described in "Making Convolutional Networks Shift-Invariant Again" (Zhang)
DoG_Pyramid
Example of how to use imagej-ops to build a DoG pyramid.
go-nuclear
Guides and code for 3D nuclear instance segmentation
imagej-common
ImageJ core data model
imglib2-algorithm
Image processing algorithms for ImgLib2
Marlin
Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. | Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for your specific machine.
oh-my-zsh
🙃 A delightful community-driven (with 1,300+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
reveal.js
The HTML Presentation Framework
simplified-io
Read, write, type convert images using simple methods.
stardist
StarDist - Object Detection with Star-convex Shapes
ThreeDViewer
ThreeDViewer is an ImageJ/FIJI plugin for visualization and interaction with 3D data