tianyu-lu

tcvae

Beta-tcvae for proteins, adapted from https://github.com/rtqichen/beta-tcvae

protein-design-scripts

Scripts for MD, RosettaDesign, Free Energy Calculations

dynUGENE

dynamical Uncertainty-aware GEne NEwork inference

protein-design

Python tools for protein design

ProbML

Code and assignments for https://probmlcourse.github.io/csc412/

ABC-units

A Bioinformatics Course: R modules for learning units

Assignment-1

assignment_0

Assignment 0

biggan

Modification of https://github.com/ajbrock/BigGAN-PyTorch for Proteins

bio_embeddings

Get protein embeddings from protein sequences

ColabDesign

Making Protein Design accessible to all via Google Colab!

d2l-en

An interactive deep learning book with code, math, and discussions, based on the NumPy interface.

deepul

graphein

Protein Graph Library

GRNExplorer

heterognn

CS224W Project

hgraph2graph

Hierarchical Generation of Molecular Graphs using Structural Motifs

intro-tutorial

Introduction to tools

latent-pockets

latent_ode

Code for "Latent ODEs for Irregularly-Sampled Time Series" paper

plotly

probabilisticlearning

sequence-design

structure-generation

Code for protein structure generative modelling

tianyu-lu.github.io

A lightweight, customizable single-page personal portfolio website template built with JavaScript and Sass

Tianyu_Lu

torchmd-autodiff

An example to demonstrate autograd in torchmd.

torchsde

Differentiable SDE solvers with GPU support and efficient sensitivity analysis.

vq-vae-2-pytorch

Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch

Webvision-dev