thoughtworksarts / OpenElis

Fork of OpenELIS for managing Lab workflows (Tests, Results, Samples, etc).

OpenElis

forked from OpenElis_v3.1_r2013_02_21 branch in svn

Requirements to build OpeneLIS

• java version <= "1.7"
• ant version <= "1.9.1"
• ruby version <= "2.2" and gem install compass

To build OpenElis run

• ant dist Creates OpenELIS War
• ant setupDB test test-only dist Creates clinlims database in postgres, runs tests, and then creates OpenELIS War
• ./scripts/vagrant-deploy.sh Create OpenELIS War and deploys it to your vagrant's tomcat
• ./scripts/vagrant-database.sh Runs Liquibase migration script in your vagrant

Bahmni OpenELIS (bahmni-lab) docker image

Docker images for OpenELIS and it's database are built using Github Actions.

Resources to build the following docker images can be found in the package directory.

1. bahmni/openelis
2. bahmni/openelis-db:fresh
3. bahmni/openelis-db:demo

Transifex Configuration

Transifex is a web based translation platform where one can do the translations and can be pulled into the codebase. Link to setup the Transifex Client

• tx pull -a downloads the property files

For more information please refer this link

Technical issues with the codebase

• Transaction and Hibernate session management
• Pagination handled via HttpSession
• Code duplication in various places (need examples here)
  • ResultValidationPaging, ResultsPaging and AnalyzerResultsPaging. Same copy-pasted code with very minor difference.

Functional changes made by us

• The order should contain the panel along with the tests. Hence making panel more than convenience tool for selecting multiple tests.

• AtomFeed based integration with OpenMRS and OpenERP

• REST endpoint for Patient, LabResults

• Added functionality to validate test results by a particular accession number. Also you can see items to be validated across all test sections.

Technical improvements

• Added ant buld
• Shortcircuited all calls to Session.clear