thorstenwagner

ij-ridgedetection

Detect ridges / lines with imagej

ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

R-ClustMAPDP

Maximum a-posteriori Dirichlet Process Mixtures Clustering Algorithm for R

cryoCARE_mpido

MPI Dortmund edition of cryoCARE

ij-r-plot

Small plugin to plot histograms and make basic fittings in ImageJ with R

ij-shape-filter

Shape Filter Plugin for ImageJ

ij-shape-smoothing

Shape Smoothing Plugin for ImageJ

learn_cryoem_math

cryo-EM-bash-scripts

scripts to monitor cryo-em jobs

cryodrgn

Neural networks for cryo-EM reconstruction

de-rse.github.io

Web repository

edubit

edubit programme

edubit_k7_2

Ein MakeCode-Projekt

eman2

A scientific image processing software suite with a focus on CryoEM and CryoET

Gooey

Turn (almost) any Python command line program into a full GUI application with one line

ij-ndef-ext

Serveral extension or helper plugins for the nanodefine project

imagej.github.io

The ImageJ wiki

InSilicoTEM

Simulator of a Transmission Electron Microscope (TEM) optimized for biological specimen.

Kalman-and-Bayesian-Filters-in-Python

Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.

modules

Environment Modules: provides dynamic modification of a user's environment

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

polnet

Generates synthetic datasets for Cryo-Electron Tomography

pytom-template-matching-gpu

Only GPU template matching from the PyTOM toolbox

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

subtomo2Chimera

timer_k6

Ein MakeCode-Projekt

warp