theranosisls

CONIPHER

Git repo for CONIPHER tree building

RNArtist

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

ViennaRNA

The ViennaRNA Package

bbGibson

Code related to the Biobrick-directed Gibson assembly project

BIOC-570-Final-Project-YO

Final Project: Primer Design for Gibson Assembly

assembly_cloning

R scripts for Gibson Assembly and Golden Gate Assembly cloning.

Gibson

Gibson Assembly mix calculator for molecular biology

gibson-walkthrough

Walkthrough for Gibson Assembly

Gibson-Assembly-Calculator

Gibson Assembly calculator for 2-,3-,4-,5-fragments.

clonifier

A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly

assembly

A library for simulating DNA assembly methods such as Gibson assembly

Gibthon

Gibthon Construct Designer - an interactive design tool for primers for use in the Gibson Assembly method.

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

fastcat

Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

nanopolish

Signal-level algorithms for MinION data

Digester-MultiSequencing

Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing

2022-qupath-hackathon

From 26-29 April 2022

BioProtocol-2022-Scripts

OME-TIFF_Generator

Script to generate OME-TIFF

seqtk

Toolkit for processing sequences in FASTA/Q formats

cosmosid-cli

Command line client and Python libraries for CosmosID API

ProteoformAnanlysis

This repository contains all ananlysis scripts for proteoform analysis with CCprofiler and COPF.

JAFFA

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

Pfizer_BioNTech_BNT162b2_vaccine_effectiveness_vs_Omicron

Code and data for "Predicted Symptomatic Effectiveness of Pfizer-BioNTech BNT162b2 Vaccine Against Omicron Variant of SARS-CoV-2" paper

Crick-UCLH-Legacy-VOCs-2021-05

Data and analysis scripts for "Limits of neutralising antibody activity against SARS-CoV-2 variants of concern B.1.617.2 and B.1.351 elicited by partial or full vaccination with BNT162b2 (Pfizer-BioNTech)"

DeepNovoAA

DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.

BioDepot-workflow-builder

:computer: GUI for creating bioinformatics workflows from :whale: Docker containers:

Marianas

Software for processing molecular barcoding (UMI)-based NGS data

mutation-signatures

Create mutation signatures from MAF's, and decompose them into Stratton signatures

vadr

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation