AttributeError: module 'scgen' has no attribute 'VAEArith'

[pcifist]

I tried scgen-reproducibility (e.g. https://nbviewer.org/github/M0hammadL/scGen_reproducibility/blob/master/Jupyter%20Notebooks/Fig2.ipynb), but the error:

AttributeError Traceback (most recent call last)
in
----> 1 network = scgen.VAEArith(z_dimension=100,
2 x_dimension=pbmc.shape[1],
3 model_path="../models/scGen/pbmc/CD4T/scgen")
4 network.restore_model()

AttributeError: module 'scgen' has no attribute 'VAEArith'

has been occured.
However, 'scgen' module import has been successful, could you help with this problem?

[Zhen-Hao Guo]

I tried scgen-reproducibility (e.g. https://nbviewer.org/github/M0hammadL/scGen_reproducibility/blob/master/Jupyter%20Notebooks/Fig2.ipynb), but the error:

AttributeError Traceback (most recent call last) in ----> 1 network = scgen.VAEArith(z_dimension=100, 2 x_dimension=pbmc.shape[1], 3 model_path="../models/scGen/pbmc/CD4T/scgen") 4 network.restore_model()

AttributeError: module 'scgen' has no attribute 'VAEArith'

has been occured. However, 'scgen' module import has been successful, could you help with this problem?

I have the same question

[Adam Gayoso]

Please see the latest workflow here:

https://scgen.readthedocs.io/en/latest/

The API has changed recently.

[mzhang012130]

Please see the latest workflow here:

https://scgen.readthedocs.io/en/latest/

The API has changed recently.

Thanks! I have read the workflow, but still confused on new API. So at this time, I should run scgen.SCGENVAE instead of scgen.VAEArith? But new error occurs while running the following line as AttributeError: 'SCGENVAE' object has no attribute 'predict_cross'. Could you shed more light on that?

[MJ]

Please see the latest workflow here:
https://scgen.readthedocs.io/en/latest/
The API has changed recently.

Thanks! I have read the workflow, but still confused on new API. So at this time, I should run scgen.SCGENVAE instead of scgen.VAEArith? But new error occurs while running the following line as AttributeError: 'SCGENVAE' object has no attribute 'predict_cross'. Could you shed more light on that?

Hello, I have encountered the same problem. Could you tell me how to use SCGENVAE to build the model and how to predict it? Thanks