theandyb

nyt_covid

scripts and analyses with the NYTime's COVID dataset

1000G_LSCI

Influence of local sequence context on rates of substitution in 1000G deep sequencing data

BRIDGES_redo

Clean my analysis pipeline

1000G_NYGC_LSCI

830project

BDSI24_LinReg

Short course on Linear Regression for BDSI 2024

cleanCollegeBBallData

Clean up college bball data downloaded from NCAA

codespace_profile

covid19-r

Collection of analyses, packages, visualisations of COVID19 data in R

learn-cpp

learn-perl

Small scripts written along my journey of learning (enough) perl (to get by)

LSCI

LSCI_pipeline

Code to reproduce the analyses of (...)

Markdown-CSS

🗒️ A style sheet for Markdown

mushi

[mu]tation [s]pectrum [h]istory [i]nference

phasing_clean

recipes

Short notes/scripts that might be useful but don't warrant repositories of their own

samtools-hybrid

samtools v0.1.7a with updated bgzf logic and "calmd" logic

singleton_case_control

smaug

smaug-genetics

Processing pipeline for singleton mutation project

smaug-redux

smaug-smake

Reproduce smaug-genetics analysis using snakemake

theandyb.github.io

A blog (and perhaps a portfolio at some point)

trebekbot

A Jeopardy! bot for Slack.

UMich_Dissertation_Template

University of Michigan Rackham Graduate School Dissertation Template (unofficial)