A continuation of exonerate, a generic tool for sequence alignment by Guy St. C. Slater et al. (http://www.ebi.ac.uk/~guy/exonerate/).
Exonerate is apparently unmaintained. The goal of this fork is mainly bug fixes to the final version (2.4.0).
To check out/build the final (stable) version:
$ git clone https://github.com/nathanweeks/exonerate.git $ cd exonerate $ git checkout v2.4.0 $ ./configure [YOUR_CONFIGURE_OPTIONS] $ make $ make check $ make install
To build the development version (at your own risk!):
$ git clone https://github.com/nathanweeks/exonerate.git $ cd exonerate $ git checkout develop $ autoreconf -i $ ./configure [YOUR_CONFIGURE_OPTIONS] $ make $ make check $ make install