thava / bio-colab-utils

Notes on running bio related github hosted programs in google colab environment.

Links

• Keep your session Active:If you are running long running workload, you may want this.

  https://gist.github.com/thomd/f7d8a9c0429c3bb6177237f9a67be775

• How to install and use conda on google colab:

  https://inside-machinelearning.com/en/how-to-install-use-conda-on-google-colab/

• CondaColab example notebook:

  https://colab.research.google.com/drive/1c_RGCgQeLHVXlF44LyOFjfUW32CmG6BP

Example Session

!conda --version

/bin/bash: conda: command not found

!pip install -q condacolab

import condacolab condacolab.install()

Once the installation is complete, the kernel should have rebooted itself.

!which conda print(sys.path)

To install rdkit library:

conda install -c conda-forge rdkit