Thanh-Tai Duong (Ph.D)'s repositories
An-open-Source-Software-for-Calculating-1D-Gamma-Index-in-Radiation-Therapy
An open-Source Software for Calculating 1D Gamma Index in Radiation Therapy
Python_Practice_Exercises
Notebooks for the python tutorials of my youtube channel. See specific youtube video for link to specifc notebook.
TOPAS_Brachytherapy
TOPAS_tutorial_brachytherapy
3ddoseReading
Read 3ddose file from EGSnrc
autoPET
repository for autoPET machine lerning challenge
DBSCAN_StepByStep_Analyzer
**Analyze Phase Space Files from TOPAS-nBio**
duongthanhtai.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
eb_gui
A Graphical User Interface (GUI) made for EGSnrc application egs_brachy, with additional features for converting to and from DICOM format and analyzing 3ddose files.
HN_UNet_Autosegmentation_Tool
Accessible tool for using U-Net to run automatic segmentation on head and neck CT images
ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
LinacQA-Software
Linac QA software
LinaQA
LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.
Medras-MC
Monte Carlo implementation of Medras model
MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
OpenTOPAS
Monte Carlo tool for particle simulation
pet-vae
2D variational autoencoder for reconstructing PET images implemented in pytorch.
pylinac
A TG-142 toolkit and web service for doing routine linear accelerator quality assurance
Resume
My Resume
SlicerRT
Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.
SlicerRtData
Sample DICOM-RT datasets for demonstration and testing purposes
TCIA_processing
autoPET TCIA pipeline
thanhtaiphys
My personal repository
TOPAS-nBio
TOPAS-nBio extension repository, for documentation and license see: https://topas-nbio.readthedocs.io/
TPS2TOPAS_interface
TPS2TOPAS interface