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tgbugs
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pyontutils
python utilities for working with ontologies
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18
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8
Issues:
77
Forks:
123
tgbugs/pyontutils Issues
apinat-pops-more in apinatomy.org skips neurons that do not have any phenotypes in the spreadsheet
Closed
2 years ago
Comments count
1
neurondm/modles/nerves.py change source sheet
Closed
2 years ago
Comments count
1
neurondm npo ilx.partOf serializes as an owl:Class when it should not
Updated
2 years ago
ttlfmt does not protect parentheses when formatting
Closed
2 years ago
Comments count
1
sheets should warn more loudly on duplicate columns
Updated
2 years ago
scigraph load duplicates graph build directory
Updated
2 years ago
Cell Morphological Quality vs Phenotype
Closed
2 years ago
Comments count
1
neurondm compiled location
Updated
2 years ago
Comments count
1
bad link to interlex on http://ontology.neuinfo.org/docs/NIF-Ontology/README.html
Closed
2 years ago
Comments count
1
Why are genes classified under sequence feature
Closed
2 years ago
Comments count
4
ttlser longer prefix issue
Updated
2 years ago
Comments count
1
genLabel "Mouse Neocortex +Adcy2 +CR +Calb2 +Grin3a +Inhbb +Nppc +Pde2a +RGS6 +RGS7 +SST +Sst +Zip1 +Znt3 GABARLower GLURHigher neuron (Huang2017)"
Closed
2 years ago
Comments count
1
rdfs:label "Striatum GABAergic interneuron"
Closed
2 years ago
Comments count
1
Projecting to nucleus of the diagonal band neuron
Closed
2 years ago
Comments count
1
Duplicate class
Closed
2 years ago
Comments count
1
Martinotti cell-problems classifying
Closed
2 years ago
Comments count
4
CUT Martinotti cell
Closed
2 years ago
Comments count
1
Erroneus class definition
Closed
2 years ago
Comments count
3
Merging some pythonutils parts up to RDFlib
Updated
2 years ago
Comments count
11
broken documentation link http://ontology.doc/pyontutils/docstrings.html
Closed
2 years ago
Comments count
5
npo entailed phenotypes -> subclasses
Updated
3 years ago
sparc queries to spreadsheets
Updated
3 years ago
Comments count
3
Why only one intrinsic neuron?
Closed
3 years ago
fix duplication of expression phenotype and neurotransmitter phenotype
Updated
4 years ago
sheets.Sheet.update fails if target sheet is empty
Updated
4 years ago
stale curie map issue
Updated
4 years ago
merge pyontutils.sheets.Sheet with sparcur.datasets.Tabular and add caching when the version of record is remote
Updated
4 years ago
clifun args and defaults are backwards
Updated
4 years ago
Comments count
1
should prov for single files use the last commit per file or the current commit
Updated
4 years ago
figure out how to sanely set ontology local repo at runtime
Updated
4 years ago
ttlser sporadic determinism failures
Closed
4 years ago
move Ont Class, etc to their own file
Updated
4 years ago
Comments count
1
devconfig.write called via ontutils devconfig doesn't save hypothesis_api_user
Closed
4 years ago
Comments count
1
decouple external resource dependent code
Updated
4 years ago
Comments count
3
ontree flatten 500 errror
Closed
4 years ago
Comments count
1
hierarchies should allow collapse for all duplicates
Closed
4 years ago
Comments count
1
graphloading issue
Updated
5 years ago
This is just a test to see if I can get an image to display
Closed
5 years ago
Comments count
1
ilxutils diff does not detect whitespace changes
Updated
5 years ago
ttlser major inconsistency when serializing apinat graphs
Updated
5 years ago
Two neuropeptide Y
Updated
5 years ago
Neurofilament mRNA
Updated
5 years ago
Duplicate cholecysokinin
Updated
5 years ago
neurondm labels for logical phenotypes
Updated
5 years ago
scigraph client restService.__del__ called multiple times
Updated
5 years ago
Olfactory cells are classified as reticular cells
Updated
5 years ago
Classification error
Closed
5 years ago
Comments count
1
Vestibular nuclei cells are missing from the CUTs. Please add.
Updated
5 years ago
Comments count
2
scigraph_client Annotation.annotationPost bad return type
Updated
6 years ago
ontree missing rdfs:subPropertyOf -> subPropertyOf translation
Closed
6 years ago
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