Thomas Funck's repositories
minc_keras
minc_keras is a code base that was developped during a hackathon to facillitate the implementation of deep learning models for brain imaging with the Keras package.
hacking_hour
A workshop series on Python programming for neuroimaging
brainbuilder
A software package for 3D reconstruction of 2D brain sections
curriculum-vitae
Curriculum vitae
deep-mri-qc
This project is trained on private MRI data, where scans are marked QC_PASS or QC_FAIL. Several architectures of neural networks are explored to make automatic predictions for new images.
fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
image_flow
Simple object-oriented datastructures for building image processing pipelines
mirror_volume
Mirror a 3D volume through the center
perceiver-pytorch
Implementation of Perceiver, General Perception with Iterative Attention, in Pytorch
simple_pet_pipeline
A simple pipeline for PET image analysis