Teng Gao's repositories
genomics_utils
Utilities for genomics and NGS data analysis
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BayesCF
Bayesian inference of mutational cell fractions
BreaKmer_analysis
ockerized BreaKmer algorithm by Ryan Abo: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330340/
BreaKmer_backup
A method to identify structural variation from sequencing data in target regions (Abo et al.)
clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
DALEX
Descriptive mAchine Learning EXplanations
docker-cnacs
🐳 A python 2.7 container with CNACs requirements and db.
fishplot
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
genomics
2017 AI & Genomics Hackathon in San Francisco
INTEGRATE-Vis
Tool for comprehensive gene fusion visualization
kmeans
Implementation of K-means clustering algorithm with Spark and application on earthquake data
minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
numbat
Haplotype-aware CNV analysis from scRNA-Seq
phangorn
Phylogenetic analysis in R
redefining_cancer_treatment
Applying Bayesian methods to Kaggle competition "Personalized Medicine: Redefining Cancer Treatment"
rTensor
rTensor v1.2
sciclone
An R package for inferring the subclonal architecture of tumors
scRNA-seq_notes
A list of scRNA-seq analysis tools
teng-gao.github.io_MM
https://teng-gao.github.io/
teng-gao.github.io_old
Website
treehmm
Implementation of treeHMM for CNV detection
website
Personal website