Jelena Telenius's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
CCseqBasic3
CaptureC analysis pipeline with "lenient duplicate filtering" (VS03) - for short read lengths.
CCseqBasic4
CaptureC analysis pipeline with "proper duplicate filtering" (VS04) - for long read lengths.
CCseqBasicF
CCseqBasic - freeze version with CF3 CF4 CF5 run modes (to run with different duplicate filtering options)
CCseqBasicS
CCseqBasic - stable version of CCseqBasic analysis pipeline (getting updates when dev pipeline features get stable enough)
fastaParser
Making custom genome builds from fasta coordinates of reference and custom builds
GEObuilder
GEO auto-archiver for NGseqBasic pipe (and other data types)
intjoukkotesti
testaillaanpa naita
jquery_test_Oct2017
jquery offline test Oct 2017
macs2hubber
Macs2 wrapper, which automatically makes data hub from the output files
NGseqBasic
Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
ohtu-2020-tehtavat
Listataan kaikki repot (tein tehtavia aika moneen eri repositorioon)
ohtu-2020-viikko1b
tehtavat 14-16
ohtu-2020-viikko2a
ohtu 2020 viikko2 - tehtavat 7-8
ohtu-2020-viikko2b
verkkokauppa-tehtavat (viikko2 teht 9-12)
ohtu-2020-viikko3
kaikki viikon 3 tehtavat
ohtu-2020-viikko4ja5
viikko4 tehtavat
plateScreen96
CRISPR short indel genotype analyser for sequences, which have unique indices per well
RcourseMarch2017
testing using R together with GitHub
variantApp
to investigate if your regions of interest have variant-calling potential