telatin / proch-n50

Perl Module and Utility to calculate N50

Proch::N50

a small module to calculate N50 (total size, and total number of sequences) for a FASTA or FASTQ file. It's easy to install, with minimal dependencies.

• Distribution page in MetaCPAN

Documentation pages

Binaries

• n50
• fu-uniq
• fu-sort
• fu-rename
• fu-len
• fu-hash
• fu-grep
• fu-extract
• fu-count
• fu-compare
• fu-cat

Modules

• Proch::N50
• Proch::Seqfu

Citing

Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. 10.3390/bioengineering8050059

Last updated: 2022-07-05