teepean's repositories
karyo_RxRy
Script for sex identification and aneuploidy detection using ancient DNA.
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
bwa-mem2
The next version of bwa-mem
cgatools
Porting Complete Genomics Analysis Tools 1.8.0 (2013) from BOOST_FILESYSTEM_VERSION v2 (deprecated in 1.48.0, 2011) to v3
clade-finder
Determines Y-Haplogroup Clade From Positive and Negative SNPs
ConvertMergeVCF
This repository contains python scripts that utilize the liftOver python package
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Harjoitus-pull-request
Harjoittelemme Githubia
hisat2
Graph-based alignment (Hierarchical Graph FM index)
isa-l
Intelligent Storage Acceleration Library
MagiskOnWSA
Integrate Magisk root and Google Apps (OpenGApps) into WSA (Windows Subsystem for Android)
MINGW-packages
Package scripts for MinGW-w64 targets to build under MSYS2.
mm2-fast
Accelerated version of minimap2; up to 1.8x faster
PaddleOCR
Awesome multilingual OCR toolkits based on PaddlePaddle （practical ultra lightweight OCR system, support 80+ languages recognition, provide data annotation and synthesis tools, support training and deployment among server, mobile, embedded and IoT devices）
pcem
PCem
PLINK-to-23andMe
Recodes all the individuals in PLINK bed to 23andMe compatible files
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
snipsa
Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups.
strobealign
Aligns short reads using dynamic seed size with strobemers
Yleaf
Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
youtube-dl
Command-line program to download videos from YouTube.com and other video sites