tawilkinson / gadgetron-conda-recipes

Anaconda recipes

Gadgetron conda recipes

This repo contains conda recipes for a number of Gadgetron and ISMRMRD (https://github.com/ismrmrd/ismrmrd related projects and has been used to produce the conda packages in https://anaconda.org/gadgetron/repo.

Testing the packages

To spin up a Gadgetron environment in conda, first install conda and define the following environment.yml file:

name: gadgetron-test-env
channels:
  - nvidia/label/cuda-11.6.0
  - gadgetron
  - conda-forge
  - defaults
  - intel
dependencies:
  - gadgetron=4.1.2
  - siemens_to_ismrmrd>=1.0.0

And create the environment with:

conda env create -f environment.yml

Then activate the environment with:

conda activate gadgetron-test-env

And you should be able to run the Gadgetron. Test capabilities with gadgetron --info

Building packages

Use the build.sh script at the root to build all or a specific packe and optionally push to anaconda.org. For example, to build and force push the ismrmrd package, use:

./build.sh -p ismrmrd --token <TOKEN> -u <user or org> --push --force

If you would like to upload the packages, do conda config --set anaconda_upload yes and log in with your anaconda.org account first.