Hugo Tavares's repositories
data_carpentry_extras
Extra materials for data carpentry courses
BioPipelines
personal scripts for common bioinformatic pipelines
publication_Otero2022_PhloemPoleAtlas
analysis code for Otero et al 2020
bioinformatics-resources
Collection of Bioinformatics-related books and training materials
MagicHelpR
R package for QTL mapping in multiparent intercross (MAGIC) lines
qtl2helper
R package with helper functions for working with `R/qtl2` objects
r-intro-tidyverse-gapminder
Data Carpentry: Introduction to R/tidyverse
publication_Abley2020_SeedGerminationVariability
Analysis code for Abley & Formosa et al 2020
publication_deJong2019_Nplasticity
Analysis code for research publication: de Jong et al. (2019)
R-intro-Cambridge-SysBio
Introduction to R for Part III Systems Biology course, Cambridge University
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
Bulk_RNASeq_Course_March23
Course repo for March 2023
conda-envs
useful conda environment specification files
edu
BioContainers Documentation.
funcscan
(Meta-)genome screening for functional and natural product gene sequences
happy.hbrem
R package for QTL analysis of multi-parent RILs
publication_Tavares2023_Nselection
Code for publication
quarto_nvap_demo
Temporary repository to demo quarto course template
sbs-mphil-rnaseq
Course materials for "Analysis of Bulk RNA-seq" - SBS MPhil program
smk-indexer
Snakemake workflow for indexing reference genomes
test_page_redirects
https://tavareshugo.github.io/test_page_redirects/
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples