taoliu

taolib

Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)

generative-ai-for-beginners

12 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

HMMRATAC

HMMRATAC peak caller for ATAC-seq data

MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

MPRA-K562

MPRA K562 analysis source code

SAPPER

SAPPER -- call variance from ChIP-Seq directly

SCKMER

Generic Count Table Analysis codes (Dev)

AI-For-Beginners

12 Weeks, 24 Lessons, AI for All!

anndata

Annotated data.

ataqc

atom

:atom: The hackable text editor

BETA_py3

BETA (Binding and Expression Target Analysis) from Cistrome

CEASp3

CEAS Python3 version

chess.com-game-analysis

chilin

ChIP-seq DC and QC Pipeline

cisTopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

coupleNMF

cykhash

cython wrapper for khash

explore_AI

Explore AI models

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

Genrich

Detecting sites of genomic enrichment

kmer-cnt

Code examples of fast and simple k-mer counters for tutorial purposes

lisa

epigenome analysis to rank transcription factors

MACSdata

mlx-examples

Examples in the MLX framework

rails

Ruby on Rails

retriever_app

Welcome to the retrieverApp! This is an open source tool used for publication progress reporting for large collaboration networks, consortia, and individual investigators alike.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scikit-fusion

scikit-fusion: Data fusion via collective latent factor models

taoliu.github.io

Biomisc website